Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSQSYINVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKSTPQHKTDNFAELVCSNSFRGDSLTNAVGLLKEEMRRL-----DSIIMRNGEA-HRV--------PAGGAMAVDREGYSEAVTEEIHKHPLIEVIRD----------------------EITDIPGDAITVIATGPLTSDSLAAKIHELNGGDGFYFYDAAAPIVDKNTIDMNKVYLKSRYDKGEAAYLNCPMTKEEFMAFHEALTTAEEAPLNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPEDYKGPRDGEFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLDQTFATRKNPNLFFAGQMTGVEGYVESAASGLVAGINAARRFNGESEVVFPQTTAIGALPHYITHTDSKHFQPMNVNFGIIKELEGPRIRDKKERYEAIATRALKDLEKFLNY |
| 3NIX Chain:A ((4-166)) | -EKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRF------VIGESLLPRCMEHL---DEAGFL-DAVKAQGFQQKFGAKFVRGKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQ-GVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIE-ARFIIDASGYGRVIPRMFGLDKPSGFESRRTLFTHIKDVKRPVEGNRITAVVHKPKVWIWVIPFSNGNTSVGFVGEPSYFDEYTGTPEERMRAMIANEGHIAERFKSEEFLFEPRTIEGYAISASKLYGDGFVLTGNATEFLDPIFSSGATFAMESGSKGGKLAVQFLKGEEVNWEKDFVEHMMQGIDTFRSFVTGWYDGTLHAVFFAKNPDPDHKRMICSVLAGYVWDKNNPFVKKHNTILKTLAKVIQMGEEAL------------------------------------------------------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3NIX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -35129 for 914 contacts (-38.4/contact) +
2D Compatibility (PS) -13770 + (NN) 226 + (LL) 3480
1D Compatibility (HY) -4800 + (ID) 1250
Total energy: -51243.0 ( -56.06 by residue)
QMean score : 0.449
|
|
|