Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGIEFKNVSYTYQAGTPFEGRALFDVNLKIEDASYTAFIGHTGSGKSTIMQLLNGLHIPTKGEVIVDDFSIKAGDKNKEIKFIRQKVGLVFQ-FPESQLFEETVLKDVAFGPQNF----GISQIEAERLAEEKLRLVGISEDLFDKNPFELSGGQMRRVAIAGILAMEPKVLVLDEPTAGLDPKGRKELMTLFKNLHKK-GMTIVLVTHLMDDVADYADYVYVLEAGKVTLSGQPKQIFQEVELLESKQLGVPKITKFAQRLSHKGLNLPSLPITINEFVEAIKHG
1L2T Chain:A ((2-223))
--IKLKNVTKTYKMGEEI-IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL--TALENVEL-PLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-NVARFGERIIYLKDGEVEREEKLR--------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1L2T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141900 for 1758 contacts (-80.7/contact) +
2D Compatibility (PS) -24132 + (NN) -15204 + (LL) 3536
1D Compatibility (HY) -17600 + (ID) 4150
Total energy: -199450.0 ( -113.45 by residue)
QMean score : 0.664
(partial model without unconserved sides chains):
PDB file :
Tito_1L2T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L2T-query.scw
PDB file :
Tito_Scwrl_1L2T.pdb
: