Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGEREGRVDSLLDTLYNLSEEKEAFFITQKMKKLFSVKLSKSKVILVAACLLLAGSGTAYAAHELTKQSVSVSINGKKKHIRTHANTVGDLLETLDIKTRDEDKITPAKQTKITADMDVVYEAAKPVKLTINGEEKTLWSTAKTVGALLDEQDVDVKEQDQIDPAIDTDISKDMKINIEPAFQVTVNDAGKQKKIWTTSTTVADFLKQQKMNIKDEDKIKPALDAKLTKGKADITITRIEKVTDVVEEKIAFDVKKQEDASLEKGKEKVVQKGKEGKLKKHFEVVKENGKE---VSRELVKEETAEQSKDKVIAVGTKQSSPKFETVSASGDSKTVVSRSNESTGKVMTVSSTAYTASCSGCSGHTATGVNLKNNPNAKVIAVDPNVIPLGSKVHVEG---------YGYAIAADTGSAIKGN-KIDVFF---PEKSSAYRWGNKTVKIKILN---------- |
| 2G5D Chain:A ((40-441)) | -PDRPAGIPDPAGTTVAGGGAVYTVVPHLSMPHWAAQDFAKSLQSFRLGCANLKNRQGWQDVCAQAFQT--------PIHSFQAKRFFERYFTPWQVAGNGSLA------GTVTGYYEPVLKGDGRRTERAR---FPIYGIPD---------DFISVPLPLVRIRQTGKNSGTHTADLSR---FPITARTTAIKGRFEGSRFLPYHTRNQIN----------------GGALDGKAPILGYAEDPVE---LFFMHIQGSGRLKTPSGK----------YIRIGYADKNEHPYVSIGRYMADKGYLKLGQTSMQGIKAYMRQ-------------------NPQRLAEVLGQNPSYIFFRELDGPVGALGTPLMGE---YAGAIDRHYITLGAPLFVATAHPVTRKALNRLIMAQDTGSAIKGAVRVDYFWGYGDEAGELAGKQKTTGYVWQLLPNGMKPEYRP |
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General information:
TITO was launched using:
| RESULT:
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Template: 2G5D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 61999 for 2843 contacts (21.8/contact) +
2D Compatibility (PS) -37001 + (NN) -974 + (LL) 4924
1D Compatibility (HY) -4800 + (ID) 2550
Total energy: 21598.0 ( 7.60 by residue)
QMean score : 0.186
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