Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | ---------------MKGSLSEHKAGNRRFTLYLPPSYSTDSGG----FPAVYVQDGSSLFQNQIELLESAFQQQRLPE----LVLIGIEPENRL---DEYTPWP----AASLSDRFTDFGGMGYHYLSDITNQFIPLIEENWNVTREPQSRGMIGASLGGLISMFAILK-YP-------SMFGKIGSISGSYWYENAAETIHISSLKPGTARVFMSIGSEEGREKQSIQRHMLKKTKQVHQSLKEKGFTED--------QLCLSIEKGAVHHHKYFCKQFINALEWLYGKNRSTL |
1PV1 Chain:A ((1-299)) | MKVVKEFSVCGGRLIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTC--TPDNASEKAFWQFQADKYGFAIVFPDTSPRGDEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKLDFLDNVAITGHSMGGYGAICGYLKGYSGKRYKSCSAFAPIVNPSNVPWGQKAFKGYLGEWEAYDPCLLIKN---IRHVGDDRILIHVGDSDPFLEEHLKPELLLEAVKATSWQDYVEIKKVHGF-DHSYYFVSTFVPEHAEFHARNLGLI |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PV1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -60177 for 2036 contacts (-29.6/contact) +
2D Compatibility (PS) -25550 + (NN) -2280 + (LL) 448
1D Compatibility (HY) -8000 + (ID) 2200
Total energy: -97759.0 ( -48.02 by residue)
QMean score : 0.327
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