Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKTLWKVLKIVFVSLAALVLLVSVSVFIYHHFQLNKEAALLKGKGTVVDVDGKKMNVYQEGSGKDTFVFMSGSGIAAPAYEMKGLYSKFSKENKIAVVDRAGYGYSEVSHDDRDIDTVLEQTRKALMKSGNKPPYILMPHSISGIEAMYWAQKYPKEIKAIIAMDIGLPQQYVTYKLSGVDRLKVRGFHLLTSIGFHRFIPSAVYNPEVIRQSFLTDEEKEIYKAINFKQFFNADMEHELLQSYQNGSKSVNLPAPKETPVLILDAVSDQNRHSKYAIQNRKDYEAFAAQFNTADIKELRGT-HSIYLYQPDQIYKLSMEFMRKVR |
3BF8 Chain:A ((1-255)) | -----------------------------------------------MKLNIRAQTAQNQHNNSPIVLVH---GLFGSLDNLGVLARDLVNDHNIIQVDVRNHGLS--PREPVMNYPAMAQDLVDTLDAQQIDKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIA-PVDYHVRR-------HDEIFAAINAVSESDAQTRQQAAAIMRQHLNEEGVIQFLLKSFVDGEW---RFNVPVLWDQYPHIVGWEKIPAWDHPALFIPG-----GNSPY--VSEQYRDDLLAQFPQARAHVIAGAGHWVHAEKPDAVLRAIRRYLNDH- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3BF8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -70024 for 2182 contacts (-32.1/contact) +
2D Compatibility (PS) -26812 + (NN) -8769 + (LL) 6632
1D Compatibility (HY) -3600 + (ID) 1700
Total energy: -104273.0 ( -47.79 by residue)
QMean score : 0.443
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