Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMYKDLTGKTAIVTGSSKGIGKAIAERFGKEKMNVVVNYHSDPSGADETLEIIKQNGGKAVSVEADVSKEEGIQALLDTALEHFGTLDVMVNNSGFNGVEAMPHEMSLEDWQRVIDVNVTGTFLGAKAALNHMMKNNIKGNVLNISSVHQQIPRPVNVQYSTSKGGIKMMTETLALNYADKGIRVNAIAPGTIATESNVDTKKEESRQKQLKKIPMKAFGKPEEVAAAAAWLVSE-EASYVTGATLFVDGGMTLYPSQLE
4DMM Chain:D ((26-268))----LTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERWGRLDVLVNNAGIT-RDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQR-SGRIINIASVVGEMGNPGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIAT-------------KLLEVIPLGRYGEAAEVAGVVRFLAADPAAAYITGQVINIDGGLVM------


General information:
TITO was launched using:
RESULT:

Template: 4DMM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain D - contact count / total energy / energy per contact / energy per residue : 1384 -120167 -86.83 -515.74
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain D : 0.83

3D Compatibility (PKB) : -86.83
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.83
QMean score : 0.485

(partial model without unconserved sides chains):
PDB file : Tito_4DMM.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4DMM-query.scw
PDB file : Tito_Scwrl_4DMM.pdb: