Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKICYVLLSLVCVFLFSGCSAGEEASGKKEDVTLRIAWWGGQPRHDYTTKVIELYEKKNPHVHIEAEFANWDDYWKKLAPMSAA-GQLPDVIQMDTAYLAQYGKKNQLEDLTPYTKDGTIDVSSIDENMLSGGKIDNKLYGFTLGVNVLSVIANEDLLKKAGVSINQENWTWEDYEKLAYDLQEK-AGVYGSNGMHP-PDI----FFPYYLRTKGERFYKEDGTGLAYQDDQLFVDYFERQLRLVKAKTSPTPDESAQIKGMEDDFIVKGKSAITWNYSNQYLGFARL----TDSPLSLYLPPEQMQEKALTLKPSMLFSIPKSSEHKKEAAKFINFFVNNEEANQLIKGERG--VPV--SDKVADAIKPKLNEEETNIVE-YVETASKNI---SK-ADPP-------EPVGSAEVIKLLKDTSDQILYQKVSPEKAAKTFRKKANEILERNN
4RYA Chain:A ((7-420))-------------------------------AETLTIATVNNG-DMIRMQKLTDDFTKKNPGIDVKWVTLEENVLRQKVTTDVATKGGQYDVMTIGIYEAPIWGKQGWLAPLDKLSADKDYDAADLLPPVRSGLTVDGKLYAAPFYAESSMVMYRKDLFEKAGLKMP-EAPTWDFIKEAADKITDKSKEVYGICLRGKAGWGENIAFLSAMSNSFGARWFDEQW-KPQFDQP-EWKKTLQFYVDLMKKNG-PPGASSNGF-NENLALFQTGKCGMWIDATVAASFVTNPKESKVADQVGFALAPDNGLGKRGNWLWSWNLAIPAGSKKVEAAEKFIAWATSKDYLKLVAEKDGWANVPPGTRTSLYANAD-YQK--AAPFAKMTLDSINSADPKHPTVKPVPYEGVQYVAIPEFQGIGTAVGQQFSAALAGQTTVDQALKTAQTLTEREMKKAG


General information:
TITO was launched using:
RESULT:

Template: 4RYA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 2177 -126199 -57.97 -326.09
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain A : 0.68

3D Compatibility (PKB) : -57.97
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.68
QMean score : 0.472

(partial model without unconserved sides chains):
PDB file : Tito_4RYA.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4RYA-query.scw
PDB file : Tito_Scwrl_4RYA.pdb: