Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKTLHVQTASSSYPVFIGQGIRKKA-CELLTSLNRPLTRIMFVTDEEVDRLYGDEMLHLLQEKWPVKKVTVPSGEQAKSMDMYTKLQSEAIRFHMDRS-SCIIAFGGGVVGDLAGFVAATFMRGIDFIQMPTTLLAH-DSAVGGKVAVNHPLGKNLIGAFYQPKAVLYDTDFLRSLPEKELRSGMAEVIKHAFIYDRAFLEELLN-IHSLRDI-TNDQLNDMIFKGISIKASVVQQDEKEEGIRAYLNFGHTLGHAVEAEYG-YGQITHGDAVALGMQFALYISEKTVGCE-MDRKRLVSWLKSLGYPSQIRKETETSVLLNRMMNDKKTRGGKIQFIVLNELGKVADHTFSRNELESWLNKWRLEETS
5HVN Chain:A ((13-360))-------TFSPSYNIIVDSVL--DFSHILE---YVTNKQVLVVTNTTVAKLYLTKFLAALVDDLDVRTCILEDGEQYKSQQSLDKILSTLLENHFTRNSTVLVALGGGVIGDITGFAAAIYQRGIDFIQIPTTLLSQVDSSVGGKTAINHQLGKNMIGAFYQPKVVYTSIEFYKTLPQREYIAGMAEVVKYAFIS-KDFYLWLDSNRDKILAKDSVTLI-EMVKRSCQIKAQVVAMD---TGARAILNFGHTFGHAIEKCQNYRG-LKHGEAVGVGMAQAIDFSHYLGLISQQQAKDFNDFIVSFGISIDFPNDICQKEFLEAMLLD----NKELKFILIENIGSLSLQKQSKNELEQFLDI-------


General information:
TITO was launched using:
RESULT:

Template: 5HVN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1785 -49286 -27.61 -148.00
target 2D structure prediction score : 0.59
Monomeric hydrophicity matching model chain A : 0.77

3D Compatibility (PKB) : -27.61
2D Compatibility (Sec. Struct. Predict.) : 0.59
1D Compatibility (Hydrophobicity) : 0.77
QMean score : 0.616

(partial model without unconserved sides chains):
PDB file : Tito_5HVN.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5HVN-query.scw
PDB file : Tito_Scwrl_5HVN.pdb: