Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNNLAFLFPGQGSQFVGMGKSFWNDFVLAKRLFEEASDAISMDVKKLCFDGDMTELTRTMNAQPAILTVSVIAYQVYMQEIGIKPHFLAGHSLGEYSALVCAGVLSFQEAVKLIRQRGILMQNADPEQLGTMAAITQVYIQPLQDLCTEISTEDFPVGVACMNSDQQHVISGHRQAVEFVIKKAERMGAN-HTYLNVSAPFHSSMMRSASEQFQTALNQYSFRDAEWPIISNVTAIPYNNGHSVREHLQTHMTMPVRWAESMHYLLLHGVTEVIEMGPKNVLVGLLKKITNHIAAYPLGQTSDLHLLSDSAERNENIVNLRKKQLNKMMIQSIIARNYNKDAKTYSNLTTPLFPQIQLLKERVERKEVELSAEELEHSIHLCQLICEAKQLPTWEQLRILK
3SBM Chain:A ((1-280))--MKAYMFPGQGSQAKGMGRALFDAFPALTARADGV---LGYSIRALCQDDPDQRLSQTQFTQPALYVVNALSYLKR-REEEAPPDFLAGHSLGEFSALFAAGVFDFETGLALVKKRGELMGDAR---GGGMAAVIGLDEERVRELLDQNG--ATAVDIANLNSPSQVVISGAKDEIARLQVPFEAAGAKKYTVLRVSAAFHSRFMRPAMVEFGRFLEGYDFAPPKIPVISNVTARPCKA-DGIRAALSEQIASPVRWCESIRYLMGRGVEEFVECGHGIVLTGLYAQIRRD-------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 3SBM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1605 -128958 -80.35 -462.21
target 2D structure prediction score : 0.57
Monomeric hydrophicity matching model chain A : 0.72

3D Compatibility (PKB) : -80.35
2D Compatibility (Sec. Struct. Predict.) : 0.57
1D Compatibility (Hydrophobicity) : 0.72
QMean score : 0.538

(partial model without unconserved sides chains):
PDB file : Tito_3SBM.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3SBM-query.scw
PDB file : Tito_Scwrl_3SBM.pdb: