Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKLVLIGGGYGNMRVLHRLLPNQLPDDVSITLIDRNPYHCLKT-EYYALAAGTISD-HHIR-VSFP---EHPRLDVQ-YGDITSIDIVQKQVLFQ---D--REPISYDDAIIGLGCEDKYHNVPGAPE-FTYSIQTIDQSRETYQKLNNLSANATVAIVGAGLSGVELASELRESRDDLNIILFDRGNLILSSFPERLSKYVQKWFEEHGVRIINRANITKVEEG------------------------VVYNHDDPISADAIVWTAGIQPN-KVVRDLDVEKDAQGRIVLTPHHNLPGDEHLYVVGDCASLPH--------APSAQLAEAQAEQIVQILQKRWNGEALPESMPQFKLKGVLGSLGKKAGFGLVADRPLIGRVPRMLKSGLLWMYKHHNG
3NTD Chain:A ((1-338))MKKILIIGGVAGGASAAARARRLS--ETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTIQM-NNVEHATVVGGGFIGLEMMESLHHLG--IKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQ-TSDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMFGR---------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 3NTD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1430 124 0.09 0.42
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain A : 0.66

3D Compatibility (PKB) : 0.09
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.66
QMean score : 0.568

(partial model without unconserved sides chains):
PDB file : Tito_3NTD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3NTD-query.scw
PDB file : Tito_Scwrl_3NTD.pdb: