Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVAERAGHQWCLFLDRDGVINRQVVGDYVRNWRQFEWLPGAARALKKLRAWAPYIVVVTNQQGVGAGLMSAVDVMVIHRHLQMQLASDGVLIDGFQVCPHH-------RSQRCGCRKPRPGLVLDWLGRHPDSEPLLSIVVGDSLSDLELAHNVAAAAGACASVQIGGASSGGVADASFDSLWEFAVAVGHARGERG
2GMW Chain:A ((24-205))
-------SVPAIFLDRDGTINVDH--GYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSARDYL-HIDMAASYMVGDKLEDMQAAVA--ANVGTKVLVRTGKPITPEAENAADWVLNSLADLPQAIKK---
General information:
TITO was launched using:
RESULT:
Template:
2GMW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121317 for 1481 contacts (-81.9/contact) +
2D Compatibility (PS) -19115 + (NN) -9992 + (LL) 968
1D Compatibility (HY) -8000 + (ID) 2750
Total energy: -160206.0 ( -108.17 by residue)
QMean score : 0.411
(partial model without unconserved sides chains):
PDB file :
Tito_2GMW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GMW-query.scw
PDB file :
Tito_Scwrl_2GMW.pdb
: