Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPFDDPQAELAWMFLQSLCEGGDLDEGFALLSNDFTYWSIVTR-TELDKKTFRRAVERRKQVF--EVNIELIRCVNEGETVVVEGHCDG--------VSADRTRYDSPFVCIFETRDGMIISLREYSDTQSLAEVYPVACATP-GRC
1SJW Chain:A ((2-143))
------SRQTEIVRRMVSAFNTGRTDDVDEYIHPDYLNPATLEHGIHTGPKAFAQLVGWVRATFSEEARLEEVRIEERGPWVKAYLVLYGRHVGRLVGMPPTDRRFSGEQVHLMRIVDGKIRDHRDWPDFQGTLRQLGDPWPDDEGWR
General information:
TITO was launched using:
RESULT:
Template:
1SJW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58826 for 906 contacts (-64.9/contact) +
2D Compatibility (PS) -14232 + (NN) -5256 + (LL) 100
1D Compatibility (HY) 400 + (ID) 1150
Total energy: -78964.0 ( -87.16 by residue)
QMean score : 0.433
(partial model without unconserved sides chains):
PDB file :
Tito_1SJW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SJW-query.scw
PDB file :
Tito_Scwrl_1SJW.pdb
: