Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDGFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHSVMCDVRHREEVTHLADEAFRLLGHVDVVFSNAGIVVGGPIVE-MTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVPN--AGLGAYGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNLVANSERIRGAACAQSSTTGSPGPLPLQDDNLGVDDIAQLTADAILANRLYVLPHAASRASIRRRFERIDRTFDEQAAEGWRH
3AWD Chain:C ((11-202))
---LDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQ-GVIVAIGSMSGLIVNRPQQQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTL----------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3AWD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -152521 for 1605 contacts (-95.0/contact) +
2D Compatibility (PS) -20796 + (NN) -7137 + (LL) 4888
1D Compatibility (HY) -11600 + (ID) 3450
Total energy: -190616.0 ( -118.76 by residue)
QMean score : 0.581
(partial model without unconserved sides chains):
PDB file :
Tito_3AWD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AWD-query.scw
PDB file :
Tito_Scwrl_3AWD.pdb
: