Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVAVLSGAGISAESGVPTFRDDKNGLWARFDPYELSSTQGWLRNPERVWGWYLWRHYLVANVEPNDGHRAIAAWQDHAEV-SVITQNVDDLHERAGSGAVHHLHGSLFEFRCARCGVPYT--DALPEMPEPAIEVEPPVCD-CGGLIRPDIVWFGEPLPEEPWRSAVEATGSADVMVVVGTSAIVYPAAGLPDLALARGTAVIEVNPEPTPLSGSATISIRESASQALPGLLERLPALLK
4BV2 Chain:A ((19-227))
-----LTGAGISTPSGIPDF----------YSQ-NVFDIDFFYSHPEEFYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKLESSDV----PLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLK---------------------
General information:
TITO was launched using:
RESULT:
Template:
4BV2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81601 for 1536 contacts (-53.1/contact) +
2D Compatibility (PS) -21479 + (NN) -8086 + (LL) 3300
1D Compatibility (HY) -20400 + (ID) 3750
Total energy: -132016.0 ( -85.95 by residue)
QMean score : 0.435
(partial model without unconserved sides chains):
PDB file :
Tito_4BV2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BV2-query.scw
PDB file :
Tito_Scwrl_4BV2.pdb
: