Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTATATEGAKPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSG------------APKGLFGVECDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGSWGIGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRALDERIQQGALQFIPAKRVGTPAEVAGVVSFLASED-ASYISGAVIPVDGGMGMGH
4DMM Chain:B ((25-268))
-----------PLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEMGNPGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMT---S------LLEVIPLGRYGEAAEVAGVVRFLAADPAAAYITGQVINIDGGLVM--
General information:
TITO was launched using:
RESULT:
Template:
4DMM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125255 for 1990 contacts (-62.9/contact) +
2D Compatibility (PS) -24791 + (NN) -9470 + (LL) 1420
1D Compatibility (HY) -21200 + (ID) 5400
Total energy: -184696.0 ( -92.81 by residue)
QMean score : 0.551
(partial model without unconserved sides chains):
PDB file :
Tito_4DMM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DMM-query.scw
PDB file :
Tito_Scwrl_4DMM.pdb
: