Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGIPLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLKLRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPYTVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRSIVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLAREITGYGADAIVLQPGSLR--DDVLARLRAQAGALA---- |
3W9U Chain:A ((2-287)) | ----STKYPIVLVHGLAG----------FNEIVGFP----------YFYGIADALRQDGHQVFTASLSAFNSNE----VRGKQLWQFVQTLLQETQA--------KKVNFIGHSQGPLACRYVAANY--------PDSVASVTSINGVNHGSEIADLYRRIMRKDSI-------PEYIVEKVLNAFGTIISTFSGDAIAALESLTTEQVTEFNNKYPQALPKTPGGEGDEIVN-GVHYYCFGSY-----IQGLN----LLDPTHAAMRVLNTFFTEKQN---DGLVGRSSMRLGKLIKDDYAQDHIDMVNQVAGLVGYNEDIVAIYTQHAKYLASKQL |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3W9U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 2703 for 2388 contacts (1.1/contact) +
2D Compatibility (PS) -28081 + (NN) -1757 + (LL) 4672
1D Compatibility (HY) -4400 + (ID) 2450
Total energy: -29313.0 ( -12.28 by residue)
QMean score : 0.184
|
|
|