Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEQTIYGANTPGGSGPRTKIRTHHLQRWKADGHKWAMLTAYDYSTARIFDEAGIPVLLVGDSAANVVYGYDTTVPISIDELIPLVRGVVRGAPHALVVADLPFGSYEAGPTAALAAATRFLKDGGAHAVKLEGGERVAEQIACLTAAGIPVMAHIGFTPQSVNTLGGFRVQGRGDAAEQTIADAIAVAEAGAFAVVMEMVPAELATQITGKLTIPTVGIGAGPNCDGQVLVWQDMAGFSGAKTARFVKRYADVGGELRRAAMQYAQEVAGGVFPADEHSF
1O66 Chain:A ((3-262))
-------------------LITVNTLQKMKAAGEKIAMLTAYESSFAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAAAAELM-AAGAHMVKLEGGVWMAETTEFLQMRGIPVCAHIGLTPQSVFA-----------KAQALLNDAKAHDDAGAAVVLMECVLAELAKKVTETVSCPTIGIGAGADCDGQVLVMHDMLGIFPGKTAKFVKNFMQGHDSVQAAVRAYVAEVKAKTFPAAEHI-
General information:
TITO was launched using:
RESULT:
Template:
1O66.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -207625 for 2261 contacts (-91.8/contact) +
2D Compatibility (PS) -27454 + (NN) -12800 + (LL) 276
1D Compatibility (HY) -21200 + (ID) 5900
Total energy: -274703.0 ( -121.50 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_1O66.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1O66-query.scw
PDB file :
Tito_Scwrl_1O66.pdb
: