Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIADEIQSGLACTGYPFACDHGGVLPDIYLLGKTLGGGAVPLSAMVADREIFGVVHPGEHGSTFGGNPLAAAIGTPVVSMVVWGECQARSAKLGAHLHQRLADLIGDGAVALRGLGWWADVDIERALAIGTDMSMRLADRGVLLKDTYG-AALRFAPPLVITAQEIDCAVRRFADALWEAGS
1WKG Chain:B ((222-387))
LILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALGGG-VPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPSPKIREVRGMGLMVGLELKEKAA---PYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVV------------
General information:
TITO was launched using:
RESULT:
Template:
1WKG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89149 for 1125 contacts (-79.2/contact) +
2D Compatibility (PS) -17775 + (NN) -7296 + (LL) 1152
1D Compatibility (HY) -10800 + (ID) 3000
Total energy: -126868.0 ( -112.77 by residue)
QMean score : 0.102
(partial model without unconserved sides chains):
PDB file :
Tito_1WKG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WKG-query.scw
PDB file :
Tito_Scwrl_1WKG.pdb
: