Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAGRSERLVITGAGGQLGSHLTAQAAREGRDMLAL-------TSSQWDITDPAAAERIIRHGD--VVINCAAYTDVDGAESNEAVAYAVNATGPQHLARACARVGARLIHVSTDYVFDGDFGGAEPRPYEPTDETAPQGVYARSKLAGEQAVLAAFPEAAVVRTAWVYTGGTGKD---FVAVMRRLAAGHGRVDVVDDQTGSPTYVADLAEALLALADAGVRGR----VLHAANEGVVSRFGQARAVFEECGADPQRVRPVSSAQFPRPAPRSSYSA-LSSRQWALAGLTPLRHWRSALATALAAPANSTSIDRRLPSTRD- |
| 4NDN Chain:F ((15-323)) | IPNR--RVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAA-----ERRPDVDAASQLNVDASGNLAKEAAAVGAFLIYISSDYVFDGT-----NPPYREEDIPAPLNLYGKTKLDGEKAVLENNLGAAVLRIPILYGEVEKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRMLDPSIKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDS--PVLGAQRPRNAQLDCSKLETLGIGQRTPFRIGIKESLWPFL----IDKRWRQTVFH |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NDN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -130380 for 2329 contacts (-56.0/contact) +
2D Compatibility (PS) -32215 + (NN) -19330 + (LL) 464
1D Compatibility (HY) -18000 + (ID) 3750
Total energy: -203211.0 ( -87.25 by residue)
QMean score : 0.502
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