Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLI-----DHPVRPRRLGDLLPDAFGLDDLPRERR
1UX1 Chain:C ((6-130))
--------LITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENAAYSMCNHAEQTALFKAVSEGDTEFQMLAVAADTPGPVSPCGACRQVISELCTKDVIVVLTNLQGQIKEMTVEELLPGAFSSEDL-----
General information:
TITO was launched using:
RESULT:
Template:
1UX1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86439 for 887 contacts (-97.5/contact) +
2D Compatibility (PS) -13296 + (NN) -6444 + (LL) 656
1D Compatibility (HY) -6800 + (ID) 2200
Total energy: -114523.0 ( -129.11 by residue)
QMean score : 0.293
(partial model without unconserved sides chains):
PDB file :
Tito_1UX1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UX1-query.scw
PDB file :
Tito_Scwrl_1UX1.pdb
: