Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKRFWENVGKPNDTTDGRGTTSLAMTPISQTPGLLAEAMVDLGAIEHNVRVLREHAGHAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALALRADGITAPVLAWLHPPG-IDFGPALLADVQVAVSSLRQLDELLHAVRRTGRTATVTVKVDTGLNRNGVGPAQFPAMLTALRQAMAEDAVR-LRGLMSHMVYADKPDDSINDVQAQRFTAFLAQAREQGVRFEVAHLSNSSATMARPDLTFDLVRPGIAVYGLSPVP---ALGDMGLVPAMTVKCAVALVKSIRAGEGVSYGHTWIAPRDTNLALLPIGYADGVFRSLGGRLEVLINGRRCPGVGRICMDQFMVDLGPGPLDVAEGDEAILFGPGIRGEPTAQDWADLVGTIHYEVVTSPRGRITRTYREAENR |
| 4WR3 Chain:A ((2-359)) | ---------------------------------QAATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLP--DADAFGVARLEEALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEAS--LDEPVTVWMKLDTGMHRLGVRPEQAEAFYHRL---TQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFCEG------KPGQRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGFGDGYPRAAPSGTPVLVNGREVPIVGRVAMDMICVDLGPQ-AQDKAGDPVILWGEGL----PVERIAEMTKVSAYELITRLTSRVAMKYVD---- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4WR3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -222099 for 3054 contacts (-72.7/contact) +
2D Compatibility (PS) -38334 + (NN) -13830 + (LL) 1852
1D Compatibility (HY) -20000 + (ID) 6350
Total energy: -298761.0 ( -97.83 by residue)
QMean score : 0.421
|
|
|