Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGYPVIVEATRSPIGKRNGWLSGLHATELLGAVQKAVVDKAGIQSGLHAGDVEQVIGGCVTQFGEQSNNISRVAWLTAGLPEHVGATTVDCQCGSGQQANHLIAGLIAAGAIDVGIACGIEAMSRVGLGAN----------AGPDRSLIRAQSWDIDLPNQFE---AAERIAKRRGITREDVDVFGLESQRRAQRAWAEGRFDREISPIQAPVLDEQNQPTGERRLVFRDQGLRE-TTMAGLGELKPVLEG-GIHTAGTSSQISDGAAAVLWMDEAVARAHGLTPRARIVAQALVGAEPYYHLDGPVQSTAKVLEKAGMKIGDIDIVEINEAFASVVLSWARVHEPDMDRVNVNGGAIALGHPVGCTGSRLITTALHELERTDQSLALITMCAGGALSTGTIIERI |
| 4XL3 Chain:A ((5-391)) | ----VIASAVRTAIGSYGKSLKDVPAVDLGATAIKEAVKKAGIKPE----DVNEVILGNVLQAG-LGQNPARQASFKAGLPVEIPAMTINKVCGSGLRTVSLAAQIIKAGDADVIIAGGMENMSRAPYLANNARWGYRMGNAKFVDEMITDGLWD--AFNDYHMGITAENIAERWNISREEQDEFALASQKKAEEAIKSGQFKDEIVPV---VIKGRKGET----VVDTDEHPRFGSTIEGLAKLKPAFKKDGTVTAGNASGLNDCAAVLVIMSAEKAKELGVKPLAKIVSYGSAGVDPAIMGYGPFYATKAAIEKAGWTVDELDLIESNEAFAAQSLAVAKDLKFDMNKVNVNGGAIALGHPIGASGARILVTLVHAMQKRDAKKGLATLSIGGGQGTAILLEK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XL3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -189933 for 3684 contacts (-51.6/contact) +
2D Compatibility (PS) -40240 + (NN) -17225 + (LL) 872
1D Compatibility (HY) -16400 + (ID) 7400
Total energy: -270326.0 ( -73.38 by residue)
QMean score : 0.444
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