Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRDVVGQEGLDKVFQVLRAPHTEEPTN-WSRRYKANLEKLASGDVNKVAEVVR--DLWRRDQERGLSAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS--
4C6S Chain:A ((5-146))
EEFVCISCVEEVRYS-FVSHLSEALRRKGIN-----NVVVDVDIDDLLFKESQAKIEKAG-------------VSVMVLPGNCDPSEVWLDKFAKVLECQRNNKDQAVVSVLYGDSLLRDQWLSELDFRGLSRIHQSRK---------ECSDSILVEEIVRDVYETHFYV
General information:
TITO was launched using:
RESULT:
Template:
4C6S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34387 for 1030 contacts (-33.4/contact) +
2D Compatibility (PS) -14698 + (NN) -3581 + (LL) 2244
1D Compatibility (HY) -9200 + (ID) 1450
Total energy: -61072.0 ( -59.29 by residue)
QMean score : 0.314
(partial model without unconserved sides chains):
PDB file :
Tito_4C6S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4C6S-query.scw
PDB file :
Tito_Scwrl_4C6S.pdb
: