Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRVNKTVLVLVALVALVLGLTVHKVLTAQRQADPTVLLDAGIVILPQTRKVPALEFTNQDGQAVSTASLKGRWHLLFFGYTFCPDVCPTTLAQLRELQGKLPQEVRDDLQVVFVSVDPNRDTPQQIKQYLGYFNAGFQGLTGTPENIQKLANAMSIPYIPADTSKP--NYTVDHSGNLVIIGPDGEQHGFIRAPLNNAKLEAQLPGVLKPQA--
1ON4 Chain:A ((1-174))
------------------------HMLEIKD---------------PLNYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAE-NIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGV-ENTPYDDIISDVKSASTLK
General information:
TITO was launched using:
RESULT:
Template:
1ON4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42727 for 1282 contacts (-33.3/contact) +
2D Compatibility (PS) -18127 + (NN) -10979 + (LL) 4692
1D Compatibility (HY) -10400 + (ID) 2400
Total energy: -79941.0 ( -62.36 by residue)
QMean score : 0.323
(partial model without unconserved sides chains):
PDB file :
Tito_1ON4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ON4-query.scw
PDB file :
Tito_Scwrl_1ON4.pdb
: