Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQPFAIAPSILSADFARLGEDVDKVLAAGADIVHFDVMDNHYVPNLTIGPMVCSALRK-YGVSAPIDVHLMVSPVDRIIGDFIEAGATYITFHPEASQHIDRSLQLIRDGGCKAGLVFNPATPLEVLKYVMDKVDMVLLMSVNPGFGGQKFIPGTLDKLREARALIDASGREIRLEIDGGVNVKNIREIAAAGADTFVAGSAIFNAPDYAEVIRAMHAELAQAHQ
3OVQ Chain:B ((7-222))
-----IGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPS----LDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQ
General information:
TITO was launched using:
RESULT:
Template:
3OVQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -193311 for 1855 contacts (-104.2/contact) +
2D Compatibility (PS) -23720 + (NN) -11562 + (LL) 468
1D Compatibility (HY) -20800 + (ID) 4300
Total energy: -253225.0 ( -136.51 by residue)
QMean score : 0.741
(partial model without unconserved sides chains):
PDB file :
Tito_3OVQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OVQ-query.scw
PDB file :
Tito_Scwrl_3OVQ.pdb
: