Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLWRQTPDLEQLNASQKNSIGDLLGIRFEAFDDESLTASMPVDSRTHQPFGLLHGGASVVLAESLGSMASYLCVDTSQYYCVGLEVNANHLRGLRSGRVTAVARAIHLGRTTHVWDIRLSGDDGKPSCIARLTMAVVPLAGRAG
4K4D Chain:B ((2-136))
--IWKRHLTLDELNATSDNTMVAHLGIVYTRLGDDVLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFMMTRDGQCV-VGTELNATHHRPVSEGKVRGVCQPLHLGRQNQSWEIVVFDEQGRRCCTCRLGTAVLG------
General information:
TITO was launched using:
RESULT:
Template:
4K4D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79549 for 1035 contacts (-76.9/contact) +
2D Compatibility (PS) -14019 + (NN) -1466 + (LL) 488
1D Compatibility (HY) -11200 + (ID) 3050
Total energy: -108796.0 ( -105.12 by residue)
QMean score : 0.428
(partial model without unconserved sides chains):
PDB file :
Tito_4K4D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4K4D-query.scw
PDB file :
Tito_Scwrl_4K4D.pdb
: