Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATQGVFTLPANTRFGVTAFANSSGTQTVNVLVNNETAATFSGQSTNNAVIGTQVLNSGSSGKVQVQVSVNGRPSDLVSAQVILTNELNFALVGSEDGTDNDYNDAVVVINWPLG
2JDY Chain:B ((2-115))
-ATQGVFTLPANTRFGVTAFANSSNTQTVNVLVNNETAATFSGQSTNNAVIGTQVLNSGSSGKVQVQVSVNGRPSDLVSAQVILTNELNFALVGSEDGTDNDYNDAVVVINWPLG
General information:
TITO was launched using:
RESULT:
Template:
2JDY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43592 for 843 contacts (-51.7/contact) +
2D Compatibility (PS) -12970 + (NN) -11090 + (LL) 208
1D Compatibility (HY) -14000 + (ID) 5650
Total energy: -87094.0 ( -103.31 by residue)
QMean score : 0.717
(partial model without unconserved sides chains):
PDB file :
Tito_2JDY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JDY-query.scw
PDB file :
Tito_Scwrl_2JDY.pdb
: