Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVILLGAPGAGKGTQARFITEKFGIPQISTGDMLRAAVKAGSPLGQQVKGVMDSGGLVSDDIIIALIKERITEADCAKGFLFDGFPRTIPQAEALKDA----GVTIDHVVEIAVDDEEIVSRIAGRRVHPASGRVYHTEHNPPKVAGKDDVTGEELIQREDDKEETVRHRLSVYHSQTKPLVDFYQKLSAAEGTPKYHSIAGVGSVEQITAKVLSALS
2QAJ Chain:A ((1-188))
MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDFYSE-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2QAJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65440 for 1369 contacts (-47.8/contact) +
2D Compatibility (PS) -19844 + (NN) -9025 + (LL) 2132
1D Compatibility (HY) -16000 + (ID) 4800
Total energy: -112977.0 ( -82.53 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_2QAJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QAJ-query.scw
PDB file :
Tito_Scwrl_2QAJ.pdb
: