Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTRRTAFFFDELCLWHAAGPHALTLPVGGWVQPPAAAGHAESPETKRRLKSL---LDVSGLTARLQLRSAPPASDEDLLRVHPAHY--------LERFKALSDAGGGSLGQDAPI----GPG-----------SYEIARLSAGLAIAALDAVLAGEADNAYSLSRPPGHHCLPDQAMGFCFFANIAVAIEAAKARHGVERVAVLDWDVHHGNGTQAIYYRRDDVLSISLHQ--DGCFPPGYSGAEDIGEDRGRGFNLNVP----LLPGGGHDAYMQAMQRIVLPALERFRPQLIVVASGFDANAVD--PLARMQLHSDSFRAMTAMVRDAAERHAGGRLVVVHEGGYSEAYVPFCGLAVIEELSGVRSAVRDPLRDFIELQQPNAAFRDFQRQRLEELAAQFGLCPAQPLQAAR |
3C0Z Chain:C ((58-397)) | --------------------------------------NSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNP---------------------LPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNL----AGGAVVLALEGGHDLTAICDASEACVAALLGNRV---DPLSEEGWKQKPN------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C0Z.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -179628 for 2557 contacts (-70.2/contact) +
2D Compatibility (PS) -31711 + (NN) -25204 + (LL) 6732
1D Compatibility (HY) -13600 + (ID) 5250
Total energy: -248661.0 ( -97.25 by residue)
QMean score : 0.447
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