Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAHKKAGGSTRNGRDSESKRLGVKLFGGQAVKAGNILVRQRGTKFHAGYGVGLGKDHTLFAKVDGVVKFETKGAFGRKYVSIVAA
1V8Q Chain:A ((20-84))
-------------------RLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQDRG-RLGRYVHVRPL
General information:
TITO was launched using:
RESULT:
Template:
1V8Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39004 for 448 contacts (-87.1/contact) +
2D Compatibility (PS) -7113 + (NN) -399 + (LL) 476
1D Compatibility (HY) -6000 + (ID) 1900
Total energy: -53940.0 ( -120.40 by residue)
QMean score : 0.617
(partial model without unconserved sides chains):
PDB file :
Tito_1V8Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V8Q-query.scw
PDB file :
Tito_Scwrl_1V8Q.pdb
: