Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQRSLLFALLATLLLVGGARAETDPDYSMVLLTE-NFPPYNMAINGKNFAQEDNIDGIAVDIVREMFKRAGIKYSLTLRFPWDRIYKLALEKPGYGVFVTARLAEREDKFKWVGPIGPDDWVLLAKGDSPITLGSLDEAKKYRIGAYKGDAIAEFLGKNGFE-ADLAL-RDQENAQKLVKGQIDLWASGDPAGRYLAKQEGVTGLKTV-LRFNSDQLYLALNRETPDEVVQKLQAALDGMRKEGFVEDILNSYL
3H7M Chain:A ((7-229))
----------------------RDRHRTIVVGGDRDYPPYEFID------QNGKPAGYNVELTRAIAEVMGMTVEFRL-GAWSEMFSALKSGRVDVLQGISWSEKRARQIDFTPPHTIVYHAIFARRDSP-PAAGLEDLRGRKVALHRDGIMHEYLAERGYGKDLVLTPTPADALRLLAAGGCDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQRYGYAVRQG-DAELLARFSEGLAILRKTGQYEAIRAKWL
General information:
TITO was launched using:
RESULT:
Template:
3H7M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121137 for 1806 contacts (-67.1/contact) +
2D Compatibility (PS) -23853 + (NN) -14469 + (LL) 2808
1D Compatibility (HY) -9200 + (ID) 1950
Total energy: -167801.0 ( -92.91 by residue)
QMean score : 0.516
(partial model without unconserved sides chains):
PDB file :
Tito_3H7M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3H7M-query.scw
PDB file :
Tito_Scwrl_3H7M.pdb
: