Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPSPLVLALALLGSLVPVSPAPGQALQRVGIVGGREAPGSKWPWQVSLRLKGQYWRHICGGSLIHPQWVLTAAHCVGPNVVCPEEIRVQLREQHLYYQDHLLPVNRIVMHPNYYTPENGADIALLELEDPVNVSAHVQPVTLPPALQTFPTGTPCWVTGWGDVHSGTPLPPPFPLKQVKVPIVENSMCDVQYHLGLSTGDGVRIVREDMLCAGNSKSDSCQGDSGGPLVCRVRGVWLQAGVVSWGEGCAQPNRPGIYTRVAYYLDWIHQYVPKEP
2F9N Chain:D ((1-243))
------------------------------IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLATLRVQLREQHLYYQDQLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAGNSQRDSCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYVPK--
General information:
TITO was launched using:
RESULT:
Template:
2F9N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -176736 for 2017 contacts (-87.6/contact) +
2D Compatibility (PS) -26530 + (NN) -18983 + (LL) 1788
1D Compatibility (HY) -32000 + (ID) 9300
Total energy: -261761.0 ( -129.78 by residue)
QMean score : 0.505
(partial model without unconserved sides chains):
PDB file :
Tito_2F9N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2F9N-query.scw
PDB file :
Tito_Scwrl_2F9N.pdb
: