Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEPLNRTEVSEFFLK-------GFSGYPALEHLLFPLCSAMYLVTLLGNTAIM-----AVSVLDIHLHTPVYFFLGNLSTLDICYTPTFVP--------------------------LMLVHLLSSRK-TISFAVCAIQMCLSLSTG-----STECLLLAITAYDRYLAICQPLRYHVLMS---HRLCVLLMGAAWVLCLLKSVTEMVISM----RLPFCGHHVVSHFTCKILAVLKLACGNTSVSEDFLLA-----------GSILLLPVPLAFICLSYLL--ILATILRVPSAARCCKAF----------------STCLAHLAVVLLFYGTIIFMYLKPKSKEA--HISDEVFTVLYAMVTTMLNPTIYSLRNKEVKEAAR---KVWGRSRASR- |
| 3IF5 Chain:A ((1-448)) | MRHPIPDYLASLVTELGAVNPGETAQYIPVLAEADPDRFGIALATPTGRLHCAGDADVEFTIQSASKPFTYAAALVDRGFAAVDRQVGLNPSGEAFNELSLEAESHRPDNAMINAGALAVHQLLVGPEASRKERLDRAVEIMSLLAGRRLSVDWETYESEMAVSDRNLSLAHMLRSYGVLQDSAEEIVAGYVAQCAVLVTVKDLAVMGACLATGGIHPMTGERMLPSIVARRVVSVMTSSGMYDAAGQWLADVGIPAKSGVAGGVLGALPGRVGIGVFSPRLDEVGNSARGVLACRRLSEDFRLHLMDGDSLGGTAVRFVEREGDRVFLHLQGVIRFGGAEAVLDALTDLRTGIRTVVLNLARVDRIDDVGRRLIAEGVRRLQADGVRVEVEDPERIL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3IF5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -352233 for 2374 contacts (-148.4/contact) +
2D Compatibility (PS) -32625 + (NN) -2746 + (LL) 0
1D Compatibility (HY) 4400 + (ID) 2300
Total energy: -385504.0 ( -162.39 by residue)
QMean score : 0.261
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