Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------------------MDKENSSMVTEFIFMGITQDPQMEIIFFVVFLIVYLVNVVG-----NIGMIILITTDTQL----HTPMYFFLCNL-----SFVDLGYSSAIAPR----MLADFLTNHKVISFSSCATQFAFFVGFVDAECYVLAAMAYGRFVAICRPLHYSTFMSKQVCLALMLGSYLAGLVSLVAHTTLTFSLSYCGSNIINHFFCEIPPLLALSCSDTYI---------SEILLFSLCGF----------IEFSTILIIFISYTFILVAIIRMRSAEGRLKAFSTCGSHLTGITLFYGTVMFMYLRPTSSYSLDQDKWASVFYTVIIPMLNP------------LIYSLRNKDVKAAFKKLIGKKSQ |
| 1YT3 Chain:A ((1-375)) | MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLAS--RRQINQLLNWHWKLKPQNNLPELISGWRGELMAEALHNLLQEYPQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YT3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -260523 for 2166 contacts (-120.3/contact) +
2D Compatibility (PS) -31334 + (NN) 39 + (LL) 324
1D Compatibility (HY) -5600 + (ID) 2250
Total energy: -299344.0 ( -138.20 by residue)
QMean score : 0.222
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