Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------------------------------MPNFTDVTEFTLLGL--TCRQELQVLFFVVFLA-------VYMITLLGNI---GMIILISISPQLQ--------------SPMYFFLSHLS----------FADVCFSSNVTPKMLENLLSETKTISYVGCLVQCYFFIAVVHV------------EVYILA-VMAFDRYMAGCNPLLY-----GSKMSRTVCVRLISV-------------PYVYGFSVSL-------ICTLW-----TYGLYFCGNFEINHFYCADPPLIQIACGRVHIKEITMIVIAGINFTY------SLSVVLISYTLIVVAVLRMRSADGRRKAFSTCGSHLTAVSMF--YGTPIFMYLRRPTEESVEQGKMVAVFY--TTVIPMLNPMIYSLRNKDVKEAVNK-AITKTYVRQ----- |
| 4XGC Chain:D ((5-457)) | DRELVSIRRFLKERLQRDYTTLRGYAKERSNVRLLLQRTAEMGESNSLLLLGPRGSGKTTLINSVLADLLPNKSFGENTLIVHLDGNLHTDDRVALKSITVQMQLENAADGKVFGSFAENLAFLLQCLKSKSVIFILEEFDLFCAHHNQ--TLLYNLFDVSQSAQAPICVLGVTCRLDVIELLEKRVKSRFSHRQVFLFPSLRRFEDYVDLCRDLLSLPTGNSLLLAAEKIYNLQNIQSGALYFSRNHFDPGEYGFSPRLRDAWNKQICKVLATQQARSTLQALHDFDISEAYLKNFLFRLVAHLRPQSPHITAEKMAAVGSQFEGDDKIELLCGLSVLELCLIIAIKHHSQIYDRDSFN-FEIIYARFSKFAKVSTTMQAVERSIVLKAFEHLRIAELIMPLTKVQKEFEMHKLALTYSQIHHCMQRYQALPTEVAQWAQSS |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XGC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -222157 for 1907 contacts (-116.5/contact) +
2D Compatibility (PS) -31017 + (NN) 2074 + (LL) -36
1D Compatibility (HY) -19200 + (ID) 3250
Total energy: -273586.0 ( -143.46 by residue)
QMean score : 0.086
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