Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNEMLKEELLQSIREVKDYPKKGILFKDITTLLNYPKLFNKLIDALKKRYLAL---NIDFIVGIEARGFILGSAFAYALGVGFVPVRKKGKLPAHTLSQSYSLEYGSDSIEIHSDAFRGIKGVRVVLVDDLLATGGTALASLELIKALQAECIEACFLIGLKELPGIQLLEE-HVKTFCLLEC
1ZN8 Chain:A ((3-180))
--DSELQLVEQRIRSFPDFPTPGVVFRDISPVLKDPASFRAAIGLLARHLKATHGGRIDYIAGLDSRGFLFGPSLAQELGLGCVLIRKRGKLPGPTLWASYSLEYGKAELEIQKDA--LEPGQRVVVVDDLLATGGTMNAACELLGRLQAEVLECVSLVELTSLKGREKLAPVPFFSLLQYE-
General information:
TITO was launched using:
RESULT:
Template:
1ZN8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -170190 for 1386 contacts (-122.8/contact) +
2D Compatibility (PS) -18821 + (NN) -5382 + (LL) 416
1D Compatibility (HY) -15600 + (ID) 3750
Total energy: -213327.0 ( -153.92 by residue)
QMean score : 0.491
(partial model without unconserved sides chains):
PDB file :
Tito_1ZN8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZN8-query.scw
PDB file :
Tito_Scwrl_1ZN8.pdb
: