Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADISKELIEQLVKQVVLEKMGQSSKHVDPSGILSVKLPVVKVSEEDRLDTGNPSDVVYTKDLVTLEESKRLGFGLMEM----KDTTFDWFLDYDEVDYVIEGRLDVVIDGRTVSAGPGEIIFIPKGSQIKFSVTG--EARFIYVTYPADWQS
2VPV Chain:A ((73-166))
--------------------------------------------------------ENFALEIMFDKHKEYFASGILKLPAISGQKKLSNSFRTYITFHVIQGIVEVTVCKNKFLSVKGSTFQIPAFNEYAIANRGNDEAKMFFVQVTVS---
General information:
TITO was launched using:
RESULT:
Template:
2VPV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34596 for 576 contacts (-60.1/contact) +
2D Compatibility (PS) -9950 + (NN) -3812 + (LL) 3880
1D Compatibility (HY) -4400 + (ID) 600
Total energy: -49478.0 ( -85.90 by residue)
QMean score : 0.417
(partial model without unconserved sides chains):
PDB file :
Tito_2VPV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VPV-query.scw
PDB file :
Tito_Scwrl_2VPV.pdb
: