Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MYVSMKGMLERANKEHYAVMAINCFNLETARAVIDAAQELRAPIIIDLLQDHLTSHLGSRFLTKPIIKMAEEASVEVAINLDHGHDVAIVKQCLADGFSSVMMDASSFPYEENVAITKKMVEFAEVYHASVEAEVGNIGAVTGDNYTNQEMYTDPKVAIDFAKRTGIDALAISYGSSHGDYPEGFTPAFQFDIVREIKSATNMPLVLHGGSGCGAENIRESVRLGINKINVGSDFMKAQVNQIKTNLKES-PAVNYVDLIHETIKAGTKAVKYYIHLSGSTGKSL |
1GVF Chain:A ((2-284)) | SIISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFK-HIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLG---------SAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYS--KTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSANRI- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GVF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -159215 for 2370 contacts (-67.2/contact) +
2D Compatibility (PS) -30258 + (NN) -13453 + (LL) 204
1D Compatibility (HY) -18400 + (ID) 4150
Total energy: -225272.0 ( -95.05 by residue)
QMean score : 0.556
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