Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | ------------------------MKKKIILKSSVLGLVAGTSIMFSSAFADQVG-------VQVIGVNDFHGALDNTGTANMPDGKVTNAGTAAQLDAYIDDAQKDFKQTNPNGESIRVQAGDMVGASPANSGLLQDEPTVKTFNAMNVEYGTLGNHEFDEGLAEYNRIVTGKAPAPDSNINNITKSYPHEAAKQEIVVANVIDKVNKQIPYNWKPYAIKNIPVNNKSVNVGFIGIVTKDIPNLVLRKNYEQYEFLDEAETIVKYAKELQAKNVKAIVVLAHVPATSKDDIAEGEAAEMMKKVNQLFPENSVDIVFAGHNHQYT--NGLVGKTRIVQALSQGKAYADVRGVLDTDTQDF-IETPSAKVVAVAPGKKTGSADIQAIVDQANTIVKQVTEAKIGTAEVSGMITRSVDQDNVSPVGSLITEAQLAIARKSWPDIDFAMTNNGGIRADLLIKPDGTITWGAAQAVQPFGN-ILQVVEITGRDLYKALNEQYDQKQNF---------FLQIAGLRYTYTDNKEGGEETPFKVVKAYKSNGEEINPDAKYKLVINDFLFGGGDGFASFRNAKLLGAINPDTEVFMAYITDLEKAGKKVSVPNNKPKIYVTMKMVNETITQNDGTHSIIKKLYLDRQGNIVAQEIVSDTLNQTKSKSTKINPVTTIHKKQLHQFTAINPMRNYGKPSNSTTVKSKQLPKTNSEYGQSFLMSVFGVGLIGIALNTKKKHMK |
2WDC Chain:A ((21-562)) | YDLPPYGDATLLYFSDLHGQAFPHYFMEPPNLIAPKPLMGRPGYLTGEAILRYYGVERGTPLAYLLSYVDFVELARTFGPI----------GGMGALTALIRDQKARVEAEGGK--ALVLDGGDTWTNS-GLSLLTRGEAVVRWQNLVGVD-HMVSHWEWTLGRERVEELLGL--------------------FRGEFLSYNIVDDLFGDPLF--PAYRIHRV----GPYALAVVGASYPYVKVSHPESFTEGLSFALDERRLQEAVDKARAEGANAVVLLSHNGMQLDAALAE--------------RIRGIDLILSGHTHDLTPRPWRVGKTWIVAGSAAGK----ALMRVDLKLWKGGIANLRVRVLPVLAEHLPKAEDVEAFLKAQLAPHQDHLFTPLAVSE--TLLYKR------DTLYSTWDQLVGEAVKAIYPEVEVVFSP--AVRWGTTILPGQAITWDHLYAYTGFTYPELYLFYLRGAQIKAVLEDIASNVFTSDPFYQQGGDVSRVFGLRYVLDPDAPTGER-----VREVEVGGRPLDPNRRYLAAAY-----GGRLQRVGEAKP--------------------------------------------------------------GYEPRPIYEVLAEYLRSVGRVRVRPEPNVKVIG------------RNYRLP-----------------------------EVTG----------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2WDC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -108828 for 4346 contacts (-25.0/contact) +
2D Compatibility (PS) -53910 + (NN) -12252 + (LL) 10372
1D Compatibility (HY) -18800 + (ID) 4500
Total energy: -187918.0 ( -43.24 by residue)
QMean score : 0.403
|
|
|