Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIADVLRNKGAAVVTINPDATVGELLAGLAEQNIGAMVVVGAEG-VVGIVSERDVVRQLHTYGAS---------VLSRPVAKIMSTTVATCTKSDTVDKISVLMTENRVRHVPVLD-GKKLIGIVSIGDVVKSRMGELEAEQQQLQSYITQG
4GQW Chain:A ((76-227))
-TVGEFM-TKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALD----TWKTFNAVQKL--GKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQ----------------
General information:
TITO was launched using:
RESULT:
Template:
4GQW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93586 for 865 contacts (-108.2/contact) +
2D Compatibility (PS) -12620 + (NN) -4526 + (LL) 2248
1D Compatibility (HY) -11200 + (ID) 1450
Total energy: -121134.0 ( -140.04 by residue)
QMean score : 0.636
(partial model without unconserved sides chains):
PDB file :
Tito_4GQW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GQW-query.scw
PDB file :
Tito_Scwrl_4GQW.pdb
: