Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRPEPTNAPAALSRRFSVAP-MMDWTDRHCRFFLRQLSRHTLLYTE-MVTTGALL-HGDRQRFLRYDECEHPLALQLGGSVPAELAACARLAEEAGYDEVNLNVGCPSDRVQHNMIGACLMGHPALVADCVKAMLDAVEIAVTVKHRIGINGRDSYAELCDFVGQVREAGCRSFTVHARIAILEGLSPKENREVPPLRYEVAAQLKKDFPDLEIVLNGGIKTLEACREHLQT--FDGVMLGREAYHNPYLLAAVDSQLFGSEAPPLSRSEALLRLRPYIERHQAEGGAMHHV---TRHILGLAQGFPGSRRFRQLL-SVDVHKAADP-LRVFDQALELLAGR |
| 1VHN Chain:A ((5-309)) | -------------VKVGLAPMA-GYTDSAFRTLAFEWG-ADFAFSEMVSAKGFL-MNSQKTEELLPQPHERNVAVQIFGSEPNELSEAARILSE-KYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNE----VEEIYRILVEEGVDEVFIHTR--------TVVQSFTGRAEWKALSVLEKRIP---TFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLRSGKYSEPSREEILRTFERHLELLIKTKGERKAVVEMRKFLAGYTKDLKGARRFREKVMKIEEVQILKEMFYNFIKEVE----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VHN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -175355 for 2481 contacts (-70.7/contact) +
2D Compatibility (PS) -31940 + (NN) -13188 + (LL) 2920
1D Compatibility (HY) -14400 + (ID) 3400
Total energy: -235363.0 ( -94.87 by residue)
QMean score : 0.477
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