Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAELQRASVTGGGLYERLLQRLALALDEADTAERLRDEHPTELELRGLSEAEMGLIRAYLDQDLHWLRGWHAAAEELALLERQPGRTPRPPRPQPPAPRRHVSLKQRQLLCALCGAPVQWSK---GHGVLPCGHCGSQLFRSGNGR
3VPB Chain:E ((3-37))
-----------------------------------------------------------------------------------------------------------VLKCPVCNGDVNVPDDALPGEIVE-HECGAQLEVYN---
General information:
TITO was launched using:
RESULT:
Template:
3VPB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23094 for 160 contacts (-144.3/contact) +
2D Compatibility (PS) -3387 + (NN) 1016 + (LL) 7608
1D Compatibility (HY) -3200 + (ID) 400
Total energy: -21457.0 ( -134.11 by residue)
QMean score : 0.681
(partial model without unconserved sides chains):
PDB file :
Tito_3VPB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VPB-query.scw
PDB file :
Tito_Scwrl_3VPB.pdb
: