Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
NLYQFKNMIHCTVPSRPWWHFADYGCYCGRGGKGTAVDDLDRCCQVHDNCYGEAEKLGCWPYLTLYKYECSQGKLTCSGGNNKCEAAVCNCDLVAANCFAGA--PYIDANYNVNLKERCQ
1JLT Chain:B ((1-116))
NLFQFAKMINGKLGAFSVWNYISYGCYCGWGGQGTPKDATDRCCFVHDCCYGRV--RGCNPKLAIYSYSFKKGNIVCG-KNNGCLRDICECDRVAANCFHQNKNTYNKNYKFLSSS-RCR
General information:
TITO was launched using:
RESULT:
Template:
1JLT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78631 for 838 contacts (-93.8/contact) +
2D Compatibility (PS) -12015 + (NN) -7147 + (LL) 100
1D Compatibility (HY) -10400 + (ID) 2550
Total energy: -110643.0 ( -132.03 by residue)
QMean score : 0.364
(partial model without unconserved sides chains):
PDB file :
Tito_1JLT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JLT-query.scw
PDB file :
Tito_Scwrl_1JLT.pdb
: