Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTLLLLAVIMIFGLLQAHGNLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDATDRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAKQDSCRSQLCECDKAAATCFARNKTTYNKKYQYYSNKHCRGSTPRC
1GMZ Chain:A ((1-122))
--------------------DLWQFGKMILKETGKLPFPYYVTYGCYCGVGGRGGPKDATDRCCFVHDCCYGKL--TSCKPKTDRYSYSRKDGTIVCGE-DPCRKEICECDKAAAVCFRENLDTYNKKYMSYLKSLCKK--DDC
General information:
TITO was launched using:
RESULT:
Template:
1GMZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47253 for 870 contacts (-54.3/contact) +
2D Compatibility (PS) -12966 + (NN) -8729 + (LL) 2740
1D Compatibility (HY) -10800 + (ID) 3100
Total energy: -80108.0 ( -92.08 by residue)
QMean score : 0.374
(partial model without unconserved sides chains):
PDB file :
Tito_1GMZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GMZ-query.scw
PDB file :
Tito_Scwrl_1GMZ.pdb
: