Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRALLLSTLVAGALSCGLPANLPQLPRVVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCISS----SRTYRVVLGRHSLSTNEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGTILPNNYVCYVTGWGRLQTNG--ASPDILQQGQLLVVDYATCSKPGWW-------GSTVKTNMICAGGDGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVIANN
2F9N Chain:A ((1-243))
----------------------------IVGGQEAPRSKWPWQVSLRVRD-RYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLATLRVQLREQHLYYQ---DQLLPVSRIIVHPQFYII--QTGADIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAGNSQ-RDSCQGDSGGPLVCK-VNGTWLQAGVVSWGE--GCAQPNRPGIYTRVTYYLDWIHHYVPK-
General information:
TITO was launched using:
RESULT:
Template:
2F9N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -167718 for 1917 contacts (-87.5/contact) +
2D Compatibility (PS) -25660 + (NN) -16579 + (LL) 2276
1D Compatibility (HY) -22400 + (ID) 4400
Total energy: -234481.0 ( -122.32 by residue)
QMean score : 0.632
(partial model without unconserved sides chains):
PDB file :
Tito_2F9N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2F9N-query.scw
PDB file :
Tito_Scwrl_2F9N.pdb
: