Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKPNVAIIVAALKPALGIGYKGKMPW-RLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQKFRPLPDRLNIILSRSYENKIIDDNIIHASSIESSLNLVSD------VERVFIIGGAEIYNELINNSLVSHLLITEIEHPSPESIEMDTFLK-FPLESWTKQPKSELQKFVGDTVLEDDIKEGDFTYNYTLWTRK
1KMV Chain:A ((3-185))
----SLNCIVAV-SQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELKEPP-QGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIM----QDFESDTFFPEIDLEKYKLLPE-----YPG--VLSDVQEEKGIKYKFEVYEKN
General information:
TITO was launched using:
RESULT:
Template:
1KMV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129794 for 1298 contacts (-100.0/contact) +
2D Compatibility (PS) -18877 + (NN) -5504 + (LL) 632
1D Compatibility (HY) -17200 + (ID) 3200
Total energy: -173943.0 ( -134.01 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_1KMV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KMV-query.scw
PDB file :
Tito_Scwrl_1KMV.pdb
: