Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNVPHKSSLPEGIRPGTVLRIRGLVPPNASRFHVNLLCGEE--QGSDAALHFNPRLDT-SEVVFNSKEQGSWGREERGPGVPFQRGQPFEVLIIASDDGFKAVVGDAQYHHFRHRLPLARVRLVEVGGDVQLDSVRIF
3VKL Chain:A ((15-151))
-PVIPFVGTIPDQLDPGTLIVIRGHVPSDADRFQVDLQNGSSMKPRADVAFHFNPRFKRAGCIVCNTLINEKWGREEITYDTPFKREKSFEIVIMVLKDKFQVAVNGKHTLLYGHRIGPEKIDTLGIYGKVNIHSIGF-
General information:
TITO was launched using:
RESULT:
Template:
3VKL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71907 for 999 contacts (-72.0/contact) +
2D Compatibility (PS) -14200 + (NN) -4771 + (LL) 340
1D Compatibility (HY) -10400 + (ID) 2200
Total energy: -103138.0 ( -103.24 by residue)
QMean score : 0.625
(partial model without unconserved sides chains):
PDB file :
Tito_3VKL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VKL-query.scw
PDB file :
Tito_Scwrl_3VKL.pdb
: