Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGIIGAMEEEVTLLRDKIEN-RQTITIGGSEIYTGQLHGVDVALLKSGIGKVAAATGATLLLERCQPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCPAGFKADDKLVAAAEDCIKALDLNAVRGLIVSGDAFINGSVALAKIRHNFPQAIAVEMEATAIAHVCHNFKVPFVVVRAISDVADQQSHLSFEEFLAVAARQSTLMVENLVQNLARG
3NM6 Chain:B ((2-230))
QKIGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAGSLVKDLKINDLLVATQLVQHDVDLSAFDHPLGFIPESAIFIETSGSLNALAKKIANEQHIALKEGVIASGDQFVHSKERKEFLVSEF-KASAVEMEGASVAFVCQKFGVPCCVLRSISDNADEKAGMSFDEFLEKSAHTSAKFLKSMVDEL---
General information:
TITO was launched using:
RESULT:
Template:
3NM6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -170822 for 2050 contacts (-83.3/contact) +
2D Compatibility (PS) -24800 + (NN) -16417 + (LL) -68
1D Compatibility (HY) -16000 + (ID) 3700
Total energy: -231807.0 ( -113.08 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_3NM6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NM6-query.scw
PDB file :
Tito_Scwrl_3NM6.pdb
: