Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------------------------------------------------MARPDPSAPPSLLLLLLAQLV-------GRAAAASKAPVCQEITVPMCRG---IGYN------------LTHMPNQFNHDTQ-----DEAGLEVHQFWPL--VEIQCSP-----DLRFF--LCSMYTPICLPDYHKPLPPCRSVCERAKAGCSPLMRQYGFAWPERMS-------------------------CDRLPVLGRDAEVLCMDYNRSEATTAPPRP--FPAKPTLPGPPGAPASGGECPAGGPF----VCKCREPFVP--ILKESHPLYNKVRTGQVPNCAVPCYQPSF---------------SADERTFATFWIGLWSVLCFI----------STSTTVATFLIDMERFRYPERPIIF----------LSACYLCVS--LGFLVRLVVGHASVACSREHNHIHYETTG-----PALCTIVFLLVYFFGMAS-------------SIWWVILSLTWFLAAGMKWGNEAI---------AGYAQYFHLAAWLIPSVKSITALALSSVDGDPVAGICYVGNQNLNSL--RGFVLG---------------PLVLYLLVGTLFLLAGFV------SLFRIRSVIKQGGTKTDKLEKLMIRI-----------GIFTLLYT------------------VPASIVVACYLYEQHY-------RESWEAA---------------LTCACPGHDTGQPRAKPEYWVLMLKYFMCLVVGITSGVWIWSGKTVESWRRF-------------TSRCCCRPRRGHK------SGGAMAAGDYPEASAALTGRTGPPGPAATYHKQVSLSHV |
| 4PKF Chain:A ((8-864)) | KVLEYKGKKLNFTPEDPAEETIPADELHEHLQKPSTARTKRLKERCRWKHASAGEFIEKSVTAGIERMRYLTEAHKASEGKPEAIRRALGLANVLNKSTLVLQEDEFIVGYHAEDPNMFPLYPELSHMAVQDYLRSDYSPQPADEAAAINEYWKPHSLQSKCQPYFDPADLGRMYQVSSMEAPSFASGYNSIVPPYETVLEDGLLARIKLAEKHIAEAQADMSTFPWNGTKGLDNIAKIDNWKAMVIACKAVISWARRQGRLCKIVAENFETDPKRQAELLEIADICQRIPAEPCKGLKDAMQAKFFTFLICHAIERYASGYAQKEDTLLWPYYKASVVDKKFQPMSHMDAVELVEMERLKISEHGAGKSRAYREIFPGSNDLFILTVGGTNAKGEDACNDMTDAILEAAKRIRTAEPSIVFRYSKKNREKTLRWVFECIRDGLGYP---SIKHDEIGTEQMKEYAKFSLNGNGATDEEAHNWVNVLCMSPGIHGRRKTQKTRSEGGGSIFPAKL-LEISLNDGYDWSYADMQLGPKTGDLSSLKSFEDVWEAFRKQYQYAINLCISTKDVSRYFEQRFLQMPFVSAIDDGCMELGMDACALSEQPNGWHNPITTIVAANSLVAIKKLVFEEKKYTLEQLSQALKANWEGFEEMRVDFKRAPKWGNDDDYADGIITRFYEEIIGGEMRKITNYSGGPVMPTGQAVGLYMEVGSRTGPTPDGRFGGEAADDGGISPYMGTDKKGPTAVLRSVSKVQKNQKGN---LLNQRLSVPIMRSKHGFEIWN-SYIKTWHDLNIDHVQFNVVSTDEMRAAQREPEKHHDLIVRVSGYSARFVDIPTYGQNTIIARQEQDFSASDLEFLNVEI- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4PKF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -374298 for 4359 contacts (-85.9/contact) +
2D Compatibility (PS) -59129 + (NN) -4792 + (LL) 900
1D Compatibility (HY) -17600 + (ID) 5300
Total energy: -460219.0 ( -105.58 by residue)
QMean score : 0.122
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