Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------------------------MEDKNQTVV-----TEFLLLGLTDHPYQKIVLFFMFLFVY---------LITLGGNL---GMITLIWIDPRLHTP-------MYFFLRHLSFVDICSSSSVV---------------PKMLCNIFAEKKD----ITFLGCAAQMWFFGLFEAA--------ECFLLAAMA-YDRYVAICKPLLYTLIMSQQVCMQLVVGPYAMALIST----MTHTIFTFCLPFCGSNIINHFFCDIFPLLSLACADTWVNKFVLFVL--AGAIGVLSGLIIMVSYICILMTILKIQTADGKQKAFFTCFSHLAAVSILYGTLFLIYVRPSS---SSSLGIYKVISLFYTVVI----------PMVNPLIYSLRNKE---VKDAFRRKIERKKFIIGR------------------------ |
| 4XGC Chain:D ((5-457)) | DRELVSIRRFLKERLQRDYTTLRGYAKERSNVRLLLQRTAEMGESNSLLLLGPRGSGKTTLINSVLADLLPNKSFGENTLIVHLDGNLHTDDRVALKSITVQMQLENAADGKVFGSFAENLAFLLQCLKSKSVIFILEEFDLFCAHHNQTLLYNLFDVSQSAQAPICVLGVTCRLDVIELLEKRVKSRFSHRQVFLFPSLRRFEDYVDLCRDLLS--LPTGNSLLLAAEKIYNLQNIQSGALYFSRNHFDPGEYGFSPRLRDAWNKQICKVLATQQARSTLQALHDFDISEAYLKNFLFRLVAHLRPQSPHITAEKMA-AVGSQFEGDDKIELLCGLSVLELCLIIAIKHHSQIYDRDSFNFEIIYARFSKFAKVSTTMQAVERSIVLKAFEHLRIAELIMPLTKVQKEFEMHKLALTYSQIHHCMQRYQALPTEVAQWAQSS |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4XGC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -258148 for 1967 contacts (-131.2/contact) +
2D Compatibility (PS) -31442 + (NN) 5776 + (LL) 280
1D Compatibility (HY) -14800 + (ID) 3000
Total energy: -301334.0 ( -153.19 by residue)
QMean score : 0.166
|
|
|